get_mut_graph

Convert a single-cell phylogeny with mutation placements into a mutation graph

Fast maximum-likelihood phylogeny inference from noisy single-cell data using the 'ScisTree' algorithm by Yufeng Wu (2019) <doi:10.1093/bioinformatics/btz676>. 'scistreer' provides an 'R' interface and improves speed via 'Rcpp' and 'RcppParallel', making the method applicable to massive single-cell datasets (>10,000 cells).

Teng Gao

scistreer

Maximum-Likelihood Perfect Phylogeny Inference at Scale

Evan Biederstedt

Peter Kharchenko

Yufeng Wu

get_mut_graph function

<dl><dt>gtree</dt>
<dd>tbl_graph The single-cell phylogeny</dd></dl>

Arguments

Convert a single-cell phylogeny with mutation placements into a mutation graph — get_mut_graph

<dl>

<dt>gtree</dt>
<dd>tbl_graph The single-cell phylogeny</dd>

</dl>

get_mut_graph: Convert a single-cell phylogeny with mutation placements into a mutation graph

Description

Usage

Value

Arguments

Examples