mut_to_tree

Transfer mutation assignment onto a single-cell phylogeny

Fast maximum-likelihood phylogeny inference from noisy single-cell data using the 'ScisTree' algorithm by Yufeng Wu (2019) <doi:10.1093/bioinformatics/btz676>. 'scistreer' provides an 'R' interface and improves speed via 'Rcpp' and 'RcppParallel', making the method applicable to massive single-cell datasets (>10,000 cells).

Teng Gao

scistreer

Maximum-Likelihood Perfect Phylogeny Inference at Scale

Evan Biederstedt

Peter Kharchenko

Yufeng Wu

mut_to_tree function

<dl><dt>gtree</dt>
<dd>tbl_graph The single-cell phylogeny</dd>
<dt>mut_nodes</dt>
<dd>dataframe Mutation placements</dd></dl>

Arguments

Transfer mutation assignment onto a single-cell phylogeny — mut_to_tree

<dl>

<dt>gtree</dt>
<dd>tbl_graph The single-cell phylogeny</dd>


<dt>mut_nodes</dt>
<dd>dataframe Mutation placements</dd>

</dl>

mut_to_tree: Transfer mutation assignment onto a single-cell phylogeny

Description

Usage

Value

Arguments

Examples