plot_phylo_heatmap

Plot phylogeny and mutation heatmap

Fast maximum-likelihood phylogeny inference from noisy single-cell data using the 'ScisTree' algorithm by Yufeng Wu (2019) <doi:10.1093/bioinformatics/btz676>. 'scistreer' provides an 'R' interface and improves speed via 'Rcpp' and 'RcppParallel', making the method applicable to massive single-cell datasets (>10,000 cells).

Teng Gao

scistreer

Maximum-Likelihood Perfect Phylogeny Inference at Scale

Evan Biederstedt

Peter Kharchenko

Yufeng Wu

plot_phylo_heatmap function

<dl><dt>tree</dt>
<dd>phylo or tbl_graph Phylogeny</dd>
<dt>P</dt>
<dd>matrix Genotype probability matrix</dd>
<dt>branch_width</dt>
<dd>numeric Branch width</dd>
<dt>root_edge</dt>
<dd>logical Whether to plot root edge</dd></dl>

Arguments

Plot phylogeny and mutation heatmap — plot_phylo_heatmap

<dl>

<dt>tree</dt>
<dd>phylo or tbl_graph Phylogeny</dd>


<dt>P</dt>
<dd>matrix Genotype probability matrix</dd>


<dt>branch_width</dt>
<dd>numeric Branch width</dd>


<dt>root_edge</dt>
<dd>logical Whether to plot root edge</dd>

</dl>

plot_phylo_heatmap: Plot phylogeny and mutation heatmap

Description

Usage

Value

Arguments

Examples