to_phylo

Convert the phylogeny from tidygraph to phylo object
modified from R package alakazam, converts a tbl_graph to a phylo object

Fast maximum-likelihood phylogeny inference from noisy single-cell data using the 'ScisTree' algorithm by Yufeng Wu (2019) <doi:10.1093/bioinformatics/btz676>. 'scistreer' provides an 'R' interface and improves speed via 'Rcpp' and 'RcppParallel', making the method applicable to massive single-cell datasets (>10,000 cells).

Teng Gao

scistreer

Maximum-Likelihood Perfect Phylogeny Inference at Scale

Evan Biederstedt

Peter Kharchenko

Yufeng Wu

to_phylo function

<dl><dt>graph</dt>
<dd>tbl_graph The single-cell phylogeny</dd></dl>

Arguments

Convert the phylogeny from tidygraph to phylo object
modified from R package alakazam, converts a tbl_graph to a phylo object — to_phylo

<dl>

<dt>graph</dt>
<dd>tbl_graph The single-cell phylogeny</dd>

</dl>

to_phylo: Convert the phylogeny from tidygraph to phylo object modified from R package alakazam, converts a tbl_graph to a phylo object

Description

Usage

Value

Arguments

Examples