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sclero (version 0.2)

Measure Growth Patterns and Align Sampling Spots in Photographs

Description

Provides functions to measure growth patterns and align sampling spots in chronologically deposited materials. The package is intended for the fields of sclerochronology, dendrochronology and geology.

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Install

install.packages('sclero')

Monthly Downloads

2

Version

0.2

License

GPL-3

Issues

0

Pull Requests

0

Stars

2

Forks

1

Maintainer

Mikko Vihtakari

Last Published

January 21st, 2016

Functions in sclero (0.2)

samplemap

Common plotting function for plot.rawDist and plot.spotDist functions
assign.size

Assign spot sizes to 'rawDist' objects for estimating spatial extent of sample averaging error.
spot.dist

Distance of sampling spots from margin along a measurement axis
shellsizes

Coordinates of sample spots together with spot size information and growth lines along a bivalve mollusk shell section
assign.value

Assign values to 'rawDist' objects for plotting.
plot.rawDist

Plot rawDist object
create.rawDist

Create rawDist data from arbitary coordinates
plot.spotDist

Plot spotDist object
barium

Barium to calcium ratios for sample spots in shellspots dataset
read.ijdata

Read ImageJ zip file containing several ROI files and extract coordinate information.
print.spotDist

Print spotDist objects
coln

Print the order and names of columns in a data frame
sclero

Measure Growth Patterns and Align Sampling Spots in Photographs
convert.ijdata

Convert IJDATA object to a list of spatstat objects
order.ijdata

Order IJDATA spot sequences and growth lines
shellspots

Coordinates of sample spots and growth lines along a bivalve mollusk shell section