scoper

scoper-package

Provides a computational framework for unsupervised identification B cell
clones from adaptive immune receptor repertoire sequencing (AIRR-Seq) datasets.
This method is based on spectral clustering of the junction sequences of B cell
receptors (BCRs, Immunoglobulins) that share the same V gene, J gene and
junction length.

Provides a computational framework for unsupervised identification B cell clones
from adaptive immune receptor repertoire sequencing (AIRR-Seq) datasets. This method
is based on spectral clustering of the junction sequences of B cell receptors (BCRs,
also referred to as Immunoglobulins, (Igs)) that share the same V gene, J gene and junction length.

Nima Nouri

Spectral Clustering-Based Method for Identifying B Cell Clones

Jason Vander Heiden

Steven Kleinstein

scoper function

<ul>
<li><a rd-options="" href="/link/defineClonesScoper?package=scoper&version=0.1.0" data-mini-rdoc="scoper::defineClonesScoper">defineClonesScoper</a>: Clustering sequences into clonal groups.</li>
<li><a rd-options="" href="/link/analyzeClones?package=scoper&version=0.1.0" data-mini-rdoc="scoper::analyzeClones">analyzeClones</a>: Summary statistics and visualization of the
 clonal clustering results.</li>
</ul>

scoper: The SCOPer package

Description

Arguments

Spectral Clustering for clOne Partitioning (SCOPer)

References