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scopr (version 0.3.4)

Read Ethoscope Data

Description

Handling of behavioural data from the Ethoscope platform (Geissmann, Garcia Rodriguez, Beckwith, French, Jamasb and Gilestro (2017) ). Ethoscopes () are an open source/open hardware framework made of interconnected raspberry pis () designed to quantify the behaviour of multiple small animals in a distributed and real-time fashion. The default tracking algorithm records primary variables such as xy coordinates, dimensions and speed. This package is part of the rethomics framework .

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Version

Install

install.packages('scopr')

Monthly Downloads

226

Version

0.3.4

License

GPL-3

Issues

7

Pull Requests

0

Stars

3

Forks

6

Maintainer

Quentin Geissmann

Last Published

August 15th, 2022

Functions in scopr (0.3.4)

experiment_info

Retrieve information about an experiment
scopr_example

Get path to scopr example
load_ethoscope

Load data from ethoscope result files
region_id_metadata

Simple toy metadata experimental conditions for 15 individuals in three experiments. the condition (test) is linked to the experiments, and another condition (treatment) is per individual. It serves as a simple example. #'
list_result_files

List all available result files
link_ethoscope_metadata_remote

Link ethoscope metadata to the matching result files
no_region_id_metadata

Simple toy metadata defining three experiments, with one condition (test) per experiment. Implicitly, 20 individuals are in each experiment It serves as a simple example.