count_table

internal

Implementation of the scregclust algorithm
described in Larsson, Held, et al. (2024) <doi:10.1038/s41467-024-53954-3>
which reconstructs regulatory programs of target genes in scRNA-seq data.
Target genes are clustered into modules and each module is associated with a linear
model describing the regulatory program.

Felix Held

scregclust

Reconstructing the Regulatory Programs of Target Genes in
scRNA-Seq Data

Ida Larsson

Sven Nelander

André Armatowski

count_table function

<dl><dt>counts</dt>
<dd>a list of count vectors with <code>1 + n_cl</code> entries each.
<code>NA</code> values are replaced with <code>-</code></dd>
<dt>title</dt>
<dd>title above the table</dd>
<dt>row_names</dt>
<dd>a vector of row names, one for each count vector</dd>
<dt>col_width</dt>
<dd>minimum width for columns</dd></dl>

Arguments

Format count table nicely — count_table

<dl>

<dt>counts</dt>
<dd>a list of count vectors with <code>1 + n_cl</code> entries each.
<code>NA</code> values are replaced with <code>-</code></dd>


<dt>title</dt>
<dd>title above the table</dd>


<dt>row_names</dt>
<dd>a vector of row names, one for each count vector</dd>


<dt>col_width</dt>
<dd>minimum width for columns</dd>

</dl>

Format count table nicely

count_table: Format count table nicely

Description

Usage

Value

Arguments