get_rand_indices

Compute Rand indices for fitted scregclust object

Implementation of the scregclust algorithm
described in Larsson, Held, et al. (2024) <doi:10.1038/s41467-024-53954-3>
which reconstructs regulatory programs of target genes in scRNA-seq data.
Target genes are clustered into modules and each module is associated with a linear
model describing the regulatory program.

Felix Held

scregclust

Reconstructing the Regulatory Programs of Target Genes in
scRNA-Seq Data

Ida Larsson

Sven Nelander

André Armatowski

get_rand_indices function

<dl><dt>fit</dt>
<dd>An object of class <code>scregclust</code></dd>
<dt>groundtruth</dt>
<dd>A known clustering of the target genes (integer vector)</dd>
<dt>adjusted</dt>
<dd>If TRUE, the Adjusted Rand index is computed. Otherwise the
ordinary Rand index is computed.</dd></dl>

Arguments

Compute Rand indices — get_rand_indices

<dl>

<dt>fit</dt>
<dd>An object of class <code>scregclust</code></dd>


<dt>groundtruth</dt>
<dd>A known clustering of the target genes (integer vector)</dd>


<dt>adjusted</dt>
<dd>If TRUE, the Adjusted Rand index is computed. Otherwise the
ordinary Rand index is computed.</dd>

</dl>

get_rand_indices: Compute Rand indices

Description

Usage

Value

Arguments

References