jaccard_indicator

Computes the Jaccard distance between rows of a matrix and returns a
sparse symmetric indicator matrix containing the entries with a distance
of less than a given upper bound. Note that the diagonal is always 1.

internal

Implementation of the scregclust algorithm
described in Larsson, Held, et al. (2024) <doi:10.1038/s41467-024-53954-3>
which reconstructs regulatory programs of target genes in scRNA-seq data.
Target genes are clustered into modules and each module is associated with a linear
model describing the regulatory program.

Felix Held

scregclust

Reconstructing the Regulatory Programs of Target Genes in
scRNA-Seq Data

Ida Larsson

Sven Nelander

André Armatowski

jaccard_indicator function

<dl><dt>x</dt>
<dd>the input matrix with vectors to be compared in the rows.</dd>
<dt>upper_bnd</dt>
<dd>pairs with a Jaccard distance below this upper bound are
returned as 1 while all others receive the entry 0.</dd></dl>

Arguments

Compute indicator matrix of pairwise distances smaller than threshold — jaccard_indicator

<dl>

<dt>x</dt>
<dd>the input matrix with vectors to be compared in the rows.</dd>


<dt>upper_bnd</dt>
<dd>pairs with a Jaccard distance below this upper bound are
returned as 1 while all others receive the entry 0.</dd>

</dl>

jaccard_indicator: Compute indicator matrix of pairwise distances smaller than threshold

Description

Usage

Value

Arguments