plot_regulator_network

Plotting the regulatory table from scregclust as a directed graph

Implementation of the scregclust algorithm
described in Larsson, Held, et al. (2024) <doi:10.1038/s41467-024-53954-3>
which reconstructs regulatory programs of target genes in scRNA-seq data.
Target genes are clustered into modules and each module is associated with a linear
model describing the regulatory program.

Felix Held

scregclust

Reconstructing the Regulatory Programs of Target Genes in
scRNA-Seq Data

Ida Larsson

Sven Nelander

André Armatowski

plot_regulator_network function

<dl><dt>output</dt>
<dd>Object of type <code>scregclust_output</code> from a fit of the
scregclust algorithm.</dd>
<dt>arrow_size</dt>
<dd>Size of arrow head</dd>
<dt>edge_scaling</dt>
<dd>Scaling factor for edge width</dd>
<dt>no_links</dt>
<dd>Threshold value (0-10) for number of edges to show,
higher value = more stringent threshold = less edges</dd>
<dt>col</dt>
<dd>color</dd></dl>

Arguments

Plotting the regulatory table from scregclust as a directed graph — plot_regulator_network

<dl>

<dt>output</dt>
<dd>Object of type <code>scregclust_output</code> from a fit of the
scregclust algorithm.</dd>


<dt>arrow_size</dt>
<dd>Size of arrow head</dd>


<dt>edge_scaling</dt>
<dd>Scaling factor for edge width</dd>


<dt>no_links</dt>
<dd>Threshold value (0-10) for number of edges to show,
higher value = more stringent threshold = less edges</dd>


<dt>col</dt>
<dd>color</dd>

</dl>

plot_regulator_network: Plotting the regulatory table from scregclust as a directed graph

Description

Usage

Value

Arguments