get_target_gene_modules

Extract target gene modules for given penalization parameters

Implementation of the scregclust algorithm
described in Larsson, Held, et al. (2024) <doi:10.1038/s41467-024-53954-3>
which reconstructs regulatory programs of target genes in scRNA-seq data.
Target genes are clustered into modules and each module is associated with a linear
model describing the regulatory program.

Felix Held

scregclust

Reconstructing the Regulatory Programs of Target Genes in
scRNA-Seq Data

Ida Larsson

Sven Nelander

André Armatowski

get_target_gene_modules function

<dl><dt>fit</dt>
<dd>An object of class <code>scregclust</code></dd>
<dt>penalization</dt>
<dd>A numeric vector of penalization parameters.
The penalization parameters specified here must have
been used used during fitting of the <code>fit</code> object.</dd></dl>

Arguments

Extract target gene modules for given penalization parameters — get_target_gene_modules

<dl>

<dt>fit</dt>
<dd>An object of class <code>scregclust</code></dd>


<dt>penalization</dt>
<dd>A numeric vector of penalization parameters.
The penalization parameters specified here must have
been used used during fitting of the <code>fit</code> object.</dd>

</dl>

get_target_gene_modules: Extract target gene modules for given penalization parameters

Description

Usage

Value

Arguments