rowHWEs

a matrix in which each row represents a SNP and each column a subject,
   where the SNPs can take the values specified by <code>levels</code>. NAs are allowed.

a vector of length three specifying the values with which the three
   genotypes of each SNP are represented. It is assumed that the second element of
   <code>levels</code> represents the heterozygous genotype, whereas the first and the
   third eleme

levels

logical specifying whether the SNPs in <code>x</code> are coded as in the Affymetrix
   standard output. If <code>TRUE</code>, <code>levels = c("AA", "AB", "BB")</code> will be used.

affy

should some checks be done if, e.g., other than the specified <code>levels</code>
   are used in <code>x</code>? It is highly recommended to leave <code>check = TRUE</code>. Setting
   <code>check = FALSE</code> will reduce the computation time slightly

check

Tests for each row of a matrix whether the Hardy-Weinberg Equilibrium holds for the SNP
represented by the row.

htest

array

Tools for the analysis of high-dimensional data
        developed/implemented at the group "Statistical Complexity
        Reduction In Molecular Epidemiology" (SCRIME).  Main focus is
        on SNP data. But most of the functions can also be applied to
        other types of categorical data.

rowHWEs: Rowwise Test for Hardy-Weinberg Equilibrium

Description

Usage

Arguments

Value