check_consistency


Dataframe containing the results of the siRNA scree


screen


    name of the column that contains the score of the screen (character vector)


scoreColName


    name of the column that contains the gene identifier of the screen (character vector)


geneColName


    name of the column that contains the siRNA sequences in the screen. (the sequences have to be provided in the guide/antisense orientation and each sequence must be in the format of a character vector, i.e. a simple string).  (character vector)


seqColName


This method takes an siRNA screen as input and check its consistency (i.e. check that the format of the data is suitable for the usage with our scsR package).
The method prints meaningful warnings for every inconsistency that can be detected


Corrects genome-wide siRNA screens for seed mediated off-target effect. Suitable functions to identify the effective seeds/miRNAs and to visualize their effect are also provided in the package.

Andrea Franceschini  Roger Meier rogermeierlmscethzch Christian von Mering meringimlsuzhch

scsR

SiRNA correction for seed mediated off-target effect

check_consistency function

Dataframe containing the results of the siRNA scree

name of the column that contains the score of the screen (character vector)

name of the column that contains the gene identifier of the screen (character vector)

name of the column that contains the siRNA sequences in the screen. (the sequences have to be provided in the guide/antisense orientation and each sequence must be in the format of a character vector, i.e. a simple string).  (character vector)

This method takes an siRNA screen as input and check its consistency (i.e. check that the format of the data is suitable for the usage with our scsR package).
The method prints meaningful warnings for every inconsistency that can be detected

check_consistency: check_consistency

Description

Usage

Arguments

Value

Examples