scsR (version 1.8.0)

enrichment_geneSet: enrichment_geneSet

Description

Computes the hypergeometric p-value that represents the enrichment of genesetA with genes of the genesetB.

Usage

enrichment_geneSet(genesetA, genesetB, background=NULL, quiet=FALSE)

Arguments

genesetA

vector of sorted genes (vector of strings)

genesetB

vector of sorted genes (vector of strings)

background

vector of genes to be used as background (vector of strings)

quiet

avoid print any message/warning (boolean)

Value

the hypergeometric p-value that represents the enrichment of genesetA with genes of the genesetB. (integer)

Examples

	data(uuk_screen)
	data(uuk_screen_dh) 
	enrichment_geneSet(unique(uuk_screen$GeneID)[1:200], 
                   unique(uuk_screen_dh$GeneID)[1:400], 
                   intersect(uuk_screen$GeneID, uuk_screen_dh$GeneID))