scsR (version 1.8.0)

median_replicates: median_replicates

Description

perform the median of the replicates (i.e. group by oligo sequence and takes the median of the score value ).

Usage

median_replicates(screen, seedColName = "seed7", scoreColName = "score", geneColName = "GeneID", seqColName="siRNA_seq", spAvgColName = NULL)

Arguments

screen

data frame containing the results of the siRNA experiment.

seedColName

name of the column that contains the seed of the sequence (character vector)

scoreColName

name of the column that contains the score of the screen (character vector)

geneColName

name of the column that contains the names of the genes in the screen (character vector)

seqColName

name of the column that contains the names of the sequences in the screen

spAvgColName

name of the column that contains the names of the genes in the screen (character vector)

Value

input data frame after having performed the median of the replicates

Examples

	data(uuk_screen)
	mr <- median_replicates(uuk_screen)