uuk_screen


  Cell Number phenotype of a genome wide siRNA screen that have been performed on Hela DC-SIGN cells that have been infected with the Uukuniemi virus.
  The screen has been performed using a QIAGEN unpooled library having 4 siRNA oligos x gene.


datasets

Corrects genome-wide siRNA screens for seed mediated off-target effect. Suitable functions to identify the effective seeds/miRNAs and to visualize their effect are also provided in the package.

Andrea Franceschini  Roger Meier rogermeierlmscethzch Christian von Mering meringimlsuzhch

scsR

SiRNA correction for seed mediated off-target effect

uuk_screen function

Data frame with 72249 observations on the following 3 variables.
  <dl>
    <dt><code>GeneID</code></dt><dd>a numeric vector</dd> <dt><code>siRNA_seq</code></dt><dd>a character vector</dd> <dt><code>score</code></dt><dd>a numeric vector</dd> </dl> 

Format

Source

Cell Number phenotype of a genome wide siRNA screen that have been performed on Hela DC-SIGN cells that have been infected with the Uukuniemi virus.
  The screen has been performed using a QIAGEN unpooled library having 4 siRNA oligos x gene.

uuk_screen: cell number phenotype of the Uukuniemi QIAGEN siRNA genome wide screen

Description

Usage

Arguments

Format

Source