get_model_formula

Helper function to convert model string (with 'y' prefix) to formula object

A normalization method for single-cell UMI count data using a
variance stabilizing transformation. The transformation is based on a
negative binomial regression model with regularized parameters. As part of the
same regression framework, this package also provides functions for
batch correction, and data correction. See Hafemeister and Satija (2019)
<doi:10.1186/s13059-019-1874-1>, and Choudhary and Satija (2022) <doi:10.1186/s13059-021-02584-9>
for more details.

Saket Choudhary

sctransform

Variance Stabilizing Transformations for Single Cell UMI Data

Christoph Hafemeister

Rahul Satija

get_model_formula function

<dl><dt>model_str</dt>
<dd>Model string with 'y' prefix (e.g., 'y ~ log_umi')</dd></dl>

Arguments

Extract model formula from model string — get_model_formula

<dl>

<dt>model_str</dt>
<dd>Model string with 'y' prefix (e.g., 'y ~ log_umi')</dd>

</dl>

get_model_formula: Extract model formula from model string

Description

Usage

Value

Arguments