sdtmchecks (version 1.0.0)

check_ae_aedthdtc_aesdth: Check AEs with AEDTHDTC value but AESDTH not "Y"

Description

This check looks for AE entries with an AEDTHDTC (death date) value and AESDTH not equal to "Y"

Usage

check_ae_aedthdtc_aesdth(AE, preproc = identity, ...)

Value

Boolean value for whether the check passed or failed, with 'msg' attribute if the check failed

Arguments

AE

Adverse Event SDTM dataset with variables USUBJID, AEDTHDTC, AESDTH, AEDECOD, AETERM, and AESTDTC

preproc

An optional company specific preprocessing script

...

Other arguments passed to methods

Author

Shumei Chi

Examples

AE <- data.frame(
USUBJID = c(1:7), 
AEDECOD = c(letters[1:5], "", NA), 
AETERM = letters[1:7],
AESDTH = "Y",
AEDTHDTC = "2020-01-02",
AESTDTC = c(1:7),
AESPID = "FORMNAME-R:5/L:5XXXX",
stringsAsFactors=FALSE)

# expect pass
check_ae_aedthdtc_aesdth(AE)
check_ae_aedthdtc_aesdth(AE,preproc=roche_derive_rave_row)

# expect fail 
AE1 <- AE
AE1$AESDTH[3] <- "N"
check_ae_aedthdtc_aesdth(AE1)
check_ae_aedthdtc_aesdth(AE1,preproc=roche_derive_rave_row)

# expect fail with AESDTH = NA
AE2 <- AE
AE2$AESDTH[4] <- NA
check_ae_aedthdtc_aesdth(AE2)
check_ae_aedthdtc_aesdth(AE2,preproc=roche_derive_rave_row)

# non-required variable missing
AE2$AESPID <- NULL
check_ae_aedthdtc_aesdth(AE2)
check_ae_aedthdtc_aesdth(AE2,preproc=roche_derive_rave_row)

# required variable missing 
AE2$AESDTH <- NULL
check_ae_aedthdtc_aesdth(AE2)
check_ae_aedthdtc_aesdth(AE2,preproc=roche_derive_rave_row)