sdtmchecks (version 1.0.0)

check_ae_aetoxgr: Check for missing AETOXGR and/or AESEV values

Description

This check looks for missing AETOXGR and/or AESEV values and returns a data frame. If both variables exist it returns records where both are missing.

Usage

check_ae_aetoxgr(AE, preproc = identity, ...)

Value

boolean value if check failed or passed with 'msg' attribute if the test failed

Arguments

AE

Adverse Events SDTM dataset with variables USUBJID, AESTDTC, AEDECOD, AETERM, and AETOXGR (or AESEV)

preproc

An optional company specific preprocessing script

...

Other arguments passed to methods

Author

Will Harris, Stella Banjo (HackR 2021)

Examples

# test with sample data


AE <- data.frame(
 USUBJID = 1:3,
 DOMAIN = c(rep("AE", 3)),
 AESEQ = 1:3,
 AESTDTC = 1:3,
 AETERM = c("FLU COUGH", "HEADACHE", "FEVER"),
 AEDECOD = c("", "Headache", "Fever"),
 AETOXGR = 1:3,
 AESEV = 1:3,
 AESPID = "FORMNAME-R:16/L:16XXXX",
 stringsAsFactors = FALSE
)

check_ae_aetoxgr(AE)

AE$AETOXGR[1] <- NA
check_ae_aetoxgr(AE)

AE$AESEV[1] <- NA
check_ae_aetoxgr(AE,preproc=roche_derive_rave_row)

AE$AETOXGR <- NULL
check_ae_aetoxgr(AE,preproc=roche_derive_rave_row)

AE$AESPID <- NULL
check_ae_aetoxgr(AE,preproc=roche_derive_rave_row)

AE$AESEV <- NULL
check_ae_aetoxgr(AE)

AE$AEDECOD <- NULL
check_ae_aetoxgr(AE)