sdtmchecks (version 1.0.0)

check_tu_tudtc_across_visit: Check TU Records where the same date occurs across multiple visits

Description

This check identifies records where the same date TUDTC occurs across multiple visits. Only applies to assessments by investigator, selected based on uppercased TUEVAL = "INVESTIGATOR" or missing or TUEVAL variable does not exist.

Usage

check_tu_tudtc_across_visit(TU, preproc = identity, ...)

Value

boolean value if check failed or passed with 'msg' attribute if the test failed.

Arguments

TU

Tumor Identification SDTM dataset with variables USUBJID, TUDTC, VISIT, TUEVAL (optional), TUTESTCD (optional)

preproc

An optional company specific preprocessing script

...

Other arguments passed to methods

Author

Will Harris

Examples

# records flagged 
TU <- data.frame(USUBJID = 1,
                 TUDTC = c(rep("2016-01-01",3), rep("2016-06-01",5), rep("2016-06-24",2)),
                 VISIT = c(rep("C1D1",3), rep("C1D2",3), rep("C2D1",4)),
                 TUSPID = "FORMNAME-R:13/L:13XXXX",
                 stringsAsFactors=FALSE)

check_tu_tudtc_across_visit(TU)
check_tu_tudtc_across_visit(TU, preproc=roche_derive_rave_row)

# no records flagged because non-Investigator results
TU2 <- TU
TU2$TUEVAL <- "INDEPENDENT ASSESSOR"

check_tu_tudtc_across_visit(TU2)
check_tu_tudtc_across_visit(TU2, preproc=roche_derive_rave_row)

# example with TUTESTCD and with records flagged
TU3 <- TU
TU3$TUTESTCD = c(rep("TUMIDENT", 2), rep("OTHER", 2), 
   rep("TUMIDENT", 2), rep("OTHER", 2), rep("TUMIDENT", 2))
check_tu_tudtc_across_visit(TU3)
check_tu_tudtc_across_visit(TU3, preproc=roche_derive_rave_row)


# example without TUSPID and with records flagged
TU4 <- TU
TU4$TUSPID <- NULL

check_tu_tudtc_across_visit(TU4)
check_tu_tudtc_across_visit(TU4, preproc=roche_derive_rave_row)

# example with required variable missing
TU5 <- TU
TU5$VISIT <- NULL

check_tu_tudtc_across_visit(TU5)
check_tu_tudtc_across_visit(TU5, preproc=roche_derive_rave_row)