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secr (version 1.3.0)

capthist.parts: Dissect Spatial Capture History Object

Description

Extract parts of an object of class 'capthist'.

Usage

animalID(object, names = TRUE)
occasion(object)
trap(object, names = TRUE)
xy(object)
signal(object)
xy(object) <- value
signal(object) <- value

Arguments

object
a 'capthist' object
names
if FALSE the values returned are numeric indices rather than names
value
replacement value (see Details)

Value

  • For animalID and trap a vector of numeric or character values, one per detection. For occasion, a vector of numeric values, one per detection. For xy, a dataframe with one row per detection and columns 'x' and 'y'.For signal, a numeric vector with one element per detection.

Details

These functions extract data on detections, ignoring occasions when an animal was not detected. trap returns polygon or transect numbers if traps(object) has detector type 'polygon' or 'transect'. Replacement values must precisely match object in number of detections in their order. xy<- expects a dataframe of x and y coordinates for points of detection within a 'polygon' or 'transect' detector.

See Also

capthist, polyID

Examples

Run this code
data(captdata)
animalID(captdata)

temp <- sim.capthist(popn=list(D=1), make.grid(detector='count'))
cbind(ID=as.numeric(animalID(temp)), occ=occasion(temp), trap=trap(temp))

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