seedy (version 1.3)

sharedvariants: Shared variants matrix

Description

Generates a matrix of shared variant counts between each sample pair.

Usage

sharedvariants(deepseqmat)

Arguments

deepseqmat

Deep sequence matrix generated by the deepseqmat function.

Value

• Returns a matrix in which each entry details the number of shared intermediate frequency variants between each pair of samples.

Examples

data(deepseq)
W <- deepseqmat(deepseq)
Y <- sharedvariants(W)