calc_dist

<code>calc_dist</code> calculate distance between locations, taking a dataframe as
input. Distance can also be smoothed over the two steps before and after the
each point.

Provides two methods for segmentation and joint segmentation/clustering of
bivariate time-series. Originally intended for ecological segmentation
(home-range and behavioural modes) but easily applied on other series,
the package also provides tools for analysing outputs from R packages 'moveHMM' and 'marcher'.
The segmentation method is a bivariate extension of Lavielle's method available in 'adehabitatLT'
(Lavielle, 1999 <doi:10.1016/S0304-4149(99)00023-X> and 2005 <doi:10.1016/j.sigpro.2005.01.012>).
This method rely on dynamic programming for efficient segmentation.
The segmentation/clustering method alternates steps of dynamic programming with an Expectation-Maximization algorithm.
This is an extension of Picard et al (2007) <doi:10.1111/j.1541-0420.2006.00729.x> method
(formerly available in 'cghseg' package) to the bivariate case.
The method is fully described in Patin et al (2018) <doi:10.1101/444794>.

Remi Patin

segclust2d

Bivariate Segmentation/Clustering Methods and Tools

Marie-Pierre Etienne

Emilie Lebarbier

Simon Benhamou

calc_dist function

<dl><dt>x</dt>
<dd>data.frame with locations</dd>
<dt>coord.names</dt>
<dd>names of coordinates column in <code>x</code></dd>
<dt>smoothed</dt>
<dd>whether distance are smoothed or not</dd></dl>

Arguments

Author

Calculate distance between locations — calc_dist

<dl>

<dt>x</dt>
<dd>data.frame with locations</dd>


<dt>coord.names</dt>
<dd>names of coordinates column in <code>x</code></dd>


<dt>smoothed</dt>
<dd>whether distance are smoothed or not</dd>

</dl>

calc_dist: Calculate distance between locations

Description

Usage

Value

Arguments

Author

Examples