plot_segm

<code>plot_segm</code> plot segmented time serie.

Provides two methods for segmentation and joint segmentation/clustering of
bivariate time-series. Originally intended for ecological segmentation
(home-range and behavioural modes) but easily applied on other series,
the package also provides tools for analysing outputs from R packages 'moveHMM' and 'marcher'.
The segmentation method is a bivariate extension of Lavielle's method available in 'adehabitatLT'
(Lavielle, 1999 <doi:10.1016/S0304-4149(99)00023-X> and 2005 <doi:10.1016/j.sigpro.2005.01.012>).
This method rely on dynamic programming for efficient segmentation.
The segmentation/clustering method alternates steps of dynamic programming with an Expectation-Maximization algorithm.
This is an extension of Picard et al (2007) <doi:10.1111/j.1541-0420.2006.00729.x> method
(formerly available in 'cghseg' package) to the bivariate case.
The method is fully described in Patin et al (2018) <doi:10.1101/444794>.

Remi Patin

segclust2d

Bivariate Segmentation/Clustering Methods and Tools

Marie-Pierre Etienne

Emilie Lebarbier

Simon Benhamou

plot_segm function

<dl><dt>data</dt>
<dd>the data.frame with the different variable</dd>
<dt>output</dt>
<dd>outputs of the segmentation or segclust algorithm for one
number of segment</dd>
<dt>interactive</dt>
<dd>should graph be interactive through leaflet ?</dd>
<dt>diag.var</dt>
<dd>names of the variables on which statistics are calculated</dd>
<dt>x_col</dt>
<dd>column name for time</dd>
<dt>html</dt>
<dd>should the graph be incorporated in a markdown file through
htmltools::tagList()</dd>
<dt>order</dt>
<dd>should cluster be ordered</dd>
<dt>stationarity</dt>
<dd>if TRUE, cut each segment in three and plot each part
with its own mean to assess stationarity of each segment</dd></dl>

Arguments

Plot segmentation on time-serie — plot_segm

<dl>

<dt>data</dt>
<dd>the data.frame with the different variable</dd>


<dt>output</dt>
<dd>outputs of the segmentation or segclust algorithm for one
number of segment</dd>


<dt>interactive</dt>
<dd>should graph be interactive through leaflet ?</dd>


<dt>diag.var</dt>
<dd>names of the variables on which statistics are calculated</dd>


<dt>x_col</dt>
<dd>column name for time</dd>


<dt>html</dt>
<dd>should the graph be incorporated in a markdown file through
htmltools::tagList()</dd>


<dt>order</dt>
<dd>should cluster be ordered</dd>


<dt>stationarity</dt>
<dd>if TRUE, cut each segment in three and plot each part
with its own mean to assess stationarity of each segment</dd>

</dl>

plot_segm: Plot segmentation on time-serie

Description

Usage

Value

Arguments