segmap_list

<code>segmap_list</code> create maps with a list of object of <code>segmentation</code>
class

Provides two methods for segmentation and joint segmentation/clustering of
bivariate time-series. Originally intended for ecological segmentation
(home-range and behavioural modes) but easily applied on other series,
the package also provides tools for analysing outputs from R packages 'moveHMM' and 'marcher'.
The segmentation method is a bivariate extension of Lavielle's method available in 'adehabitatLT'
(Lavielle, 1999 <doi:10.1016/S0304-4149(99)00023-X> and 2005 <doi:10.1016/j.sigpro.2005.01.012>).
This method rely on dynamic programming for efficient segmentation.
The segmentation/clustering method alternates steps of dynamic programming with an Expectation-Maximization algorithm.
This is an extension of Picard et al (2007) <doi:10.1111/j.1541-0420.2006.00729.x> method
(formerly available in 'cghseg' package) to the bivariate case.
The method is fully described in Patin et al (2018) <doi:10.1101/444794>.

Remi Patin

segclust2d

Bivariate Segmentation/Clustering Methods and Tools

Marie-Pierre Etienne

Emilie Lebarbier

Simon Benhamou

segmap_list function

<dl><dt>x_list</dt>
<dd>list of segmentation objects for different individuals or path</dd>
<dt>ncluster_list</dt>
<dd>list of number of cluster to be selected for each
individual. If empty, the function takes the default one</dd>
<dt>nseg_list</dt>
<dd>list of number of segment to be selected for each
individual. If empty, the function takes the default one</dd>
<dt>pointsize</dt>
<dd>size of points</dd>
<dt>linesize</dt>
<dd>size of lines</dd>
<dt>coord.names</dt>
<dd>names of coordinates</dd></dl>

Arguments

segmap_list create maps with a list of object of segmentation
class — segmap_list

<dl>

<dt>x_list</dt>
<dd>list of segmentation objects for different individuals or path</dd>


<dt>ncluster_list</dt>
<dd>list of number of cluster to be selected for each
individual. If empty, the function takes the default one</dd>


<dt>nseg_list</dt>
<dd>list of number of segment to be selected for each
individual. If empty, the function takes the default one</dd>


<dt>pointsize</dt>
<dd>size of points</dd>


<dt>linesize</dt>
<dd>size of lines</dd>


<dt>coord.names</dt>
<dd>names of coordinates</dd>

</dl>

segmap_list: `segmap_list` create maps with a list of object of `segmentation` class

Description

Usage

Value

Arguments