ufit

ufit2

ufit3

A subset of data from Cappai et al. (2020), fit using
<code>multidog()</code>. This just contains a random set of 10 loci.

datasets

Provides tests for segregation distortion in F1
polyploid populations under different assumptions of meiosis.
These tests can account for double reduction, partial preferential pairing,
and genotype uncertainty through the use of genotype likelihoods.
Parallelization support is provided. Details of these methods are
described in Gerard et al. (2025a) <doi:10.1007/s00122-025-04816-z>
and Gerard et al. (2025b) <doi:10.1101/2025.06.23.661114>.
Part of this material is based upon work supported by the
National Science Foundation under Grant No. 2132247. The
opinions, findings, and conclusions or recommendations expressed
are those of the author and do not necessarily reflect the views
of the National Science Foundation.

David Gerard

segtest

Tests for Segregation Distortion in Polyploids

Mira Thakkar

Guilherme da Silva Pereira

NSF DBI 2132247 

ufit function

An object of type <code>multidog</code> output from <code>multidog()</code>.<dl>
<dt><code>ufit</code></dt>
<dd>Uses the <code>model = "norm"</code> option.</dd><dt><code>ufit2</code></dt>
<dd>Uses the <code>model = "f1pp"</code> option.</dd><dt><code>ufit3</code></dt>
<dd>Uses the <code>model = "f1"</code> option.</dd>
</dl>An object of class <code>multidog</code> of length 2.
An object of class <code>multidog</code> of length 2.

Format

Genotype data from Cappai et al. (2020) — ufit

An object of type <code>multidog</code> output from <code>multidog()</code>.<dl>
<dt><code>ufit</code></dt>
<dd>Uses the <code>model = "norm"</code> option.</dd>

<dt><code>ufit2</code></dt>
<dd>Uses the <code>model = "f1pp"</code> option.</dd>

<dt><code>ufit3</code></dt>
<dd>Uses the <code>model = "f1"</code> option.</dd>


</dl>

An object of class <code>multidog</code> of length 2.
An object of class <code>multidog</code> of length 2.

ufit: Genotype data from Cappai et al. (2020)

Description

Usage

Arguments

Format

References