Map-class

This is a S4 <code>Map</code> class representing a genome.

Applies a unified local function to select SNPs for low-density
SNPs. The method is described in Wu et al. (2020) <doi:10.1111/age.12916>.
Briefly, the local function gives different weights to the uniformity (U score)
and average Shannon entropy (E score), depending on the inputs of the weights,
thus facilitating SNP designs under varied scenarios for low-density SNP chips,
including selecting uniformly-distributed SNPs or SNPs with the highest minor
allele frequencies. This is an educational version. For more information about
this package, please contact Dr. Nick Wu.

Nick Wu

selectSNPs

Optimal Selection of SNPs Using a Unified Local Function

Map function

<dl class="dl-horizontal">
 <dt><code>.Data</code>:</dt><dd>A list of <code>Chrom</code> objects.</dd>
 </dl>

Map: The Map class

Description

Arguments

Slots

Details