seqCNA (version 1.18.0)

plotCNProfile: Plots the profile of a SeqCNAInfo-class object.

Description

The plotted elements depend on the processing applied on the SeqCNAInfo-class object.

Usage

plotCNProfile(rco, folder = NULL)

Arguments

rco

A SeqCNAInfo-class object.

folder

Path to the folder where the plots with the output from the SeqCNAInfo-class object are to be generated. If no folder is indicated or does not exist, plots will be displayed within R.

Value

Nothing is returned from this function. Check the folder folder for a file called seqnorm_out.jpg.

Examples

data(seqsumm_HCC1143)
rco = readSeqsumm(tumour.data=seqsumm_HCC1143)
rco = applyFilters(rco, 0, 1, 0, 2, FALSE, plots=FALSE)
rco = runSeqnorm(rco, plots=FALSE)
rco = runGLAD(rco)
rco = applyThresholds(rco, seq(-0.9,4,by=0.9), 1)

plotCNProfile(rco)