TBPpwm


This is a <code><a rd-options="" href="/link/matrix?package=seqPattern&version=1.4.0" data-mini-rdoc="seqPattern::matrix">matrix</a></code> object representing a position-weight matrix 
(PWM) for TATA-box binding protein motif. The scores in the matrix correspond
to log2 ratio between probability of observing base b (rows) at position i
(columns) and background probability of base b. This PWM has been derived using 
position frequency matrix from Jaspar database. It is intended to be used as an 
input data in running examples from <code><a rd-options="" href="/link/seqPattern?package=seqPattern&version=1.4.0" data-mini-rdoc="seqPattern::seqPattern">seqPattern</a></code> package help pages.


datasets

Visualising oligonucleotide patterns and sequence motifs
occurrences across a large set of sequences centred at a common
reference point and sorted by a user defined feature.

Vanja Haberle

seqPattern

Visualising oligonucleotide patterns and motif occurrences across a set
of sorted sequences

TBPpwm function

A <code><a rd-options="" href="/link/matrix?package=seqPattern&version=1.4.0" data-mini-rdoc="seqPattern::matrix">matrix</a></code> object

Format

This is a <code><a href="matrix" rd-options="">matrix</a></code> object representing a position-weight matrix 
(PWM) for TATA-box binding protein motif. The scores in the matrix correspond
to log2 ratio between probability of observing base b (rows) at position i
(columns) and background probability of base b. This PWM has been derived using 
position frequency matrix from Jaspar database. It is intended to be used as an 
input data in running examples from <code><a href="seqPattern" rd-options="">seqPattern</a></code> package help pages.

TBPpwm: Position-weight matrix for TATA-box binding protein motif

Description

Usage

Arguments

Value

Format