seqhandbook v0.1.0

0

Monthly downloads

0th

Percentile

Miscellaneous Tools for Sequence Analysis

It provides miscellaneous sequence analysis functions for describing episodes in individual sequences, measuring association between domains in multidimensional sequence analysis (see Piccarreta (2017) <doi:10.1177/0049124115591013>), heat maps of sequence data, Globally Interdependent Multidimensional Sequence Analysis (see Robette et al (2015) <doi:10.1177/0081175015570976>), smoothing sequences for index plots (see Piccarreta (2012) <doi:10.1177/0049124112452394>), coding sequences for Qualitative Harmonic Analysis (see Deville (1982)), measuring stress from multidimensional scaling factors (see Piccarreta and Lior (2010) <doi:10.1111/j.1467-985X.2009.00606.x>), symmetrical (or canonical) Partial Least Squares (see Bry (1996)).

Readme

seqhandbook

an R package to complement the handbook on sequence analysis

It provides the datasets used in the examples in the handbook,

as well as functions for :

  • describing episodes in individual sequences (at least one episode, number of episodes, position of the start of the first episode)
  • measuring association between domains in multidimensional sequence analysis
  • heat maps of sequence data
  • Globally Interdependent Multidimensional Sequence Analysis (GIMSA)
  • smoothing sequences for index plots
  • coding sequences for Qualitative Harmonic Analysis
  • measuring stress from MDS factors
  • symmetrical PLS

installation

Execute the following code within R:

if (!require(devtools)){
    install.packages('devtools')
    library(devtools)
}
install_github("nicolas-robette/seqhandbook")

References

Functions in seqhandbook

Name Description
assoc.domains Association measures between domains in multidimensional sequence analysis
seq_heatmap Index plot of sequences ordered according to a dendrogram
seqmsa Sample of marital, parental and residential sequences
seqgimsa Sample of mothers and daughters employment histories
seqi1epi At least one episode in the states
seqmds.stress Stress measure of multidimensional scaling factors
seqsmooth Smoothing sequence data
trajact Sample of employment histories
seqinepi Number of episodes in each state
seqifpos First position in each state
seq2qha Recoding sequences for qualitative harmonic analysis
socdem Sample of sociodemographic variables
symPLS Symmetric (or canonical) PLS
No Results!

Vignettes of seqhandbook

Name
Tutoriel.Rmd
No Results!

Last month downloads

Details

Type Package
VignetteBuilder knitr
License GPL (>= 2)
Encoding UTF-8
LazyData true
NeedsCompilation no
Packaged 2020-06-29 14:38:33 UTC; nrobette
Repository CRAN
Date/Publication 2020-06-29 15:30:06 UTC

Include our badge in your README

[![Rdoc](http://www.rdocumentation.org/badges/version/seqhandbook)](http://www.rdocumentation.org/packages/seqhandbook)