seqinr (version 3.3-3)

alllistranks: To get the count of existing lists and all their ranks on server

Description

This is a low level function to get the total number of list and all their ranks in an opened database.

Usage

alllistranks(socket = autosocket(), verbose = FALSE)
alr(socket = autosocket(), verbose = FALSE)

Arguments

socket

an object of class sockconn connecting to a remote ACNUC database (default is a socket to the last opened database).

verbose

if TRUE, verbose mode is on

Value

A list with two components:

Details

This low level function is usually not used directly by the user.

References

citation("seqinr")

See Also

choosebank, query

Examples

 ## Not run: # Need internet connection
#  choosebank("emblTP")
#  tmp1 <- query("tmp1", "sp=Borrelia burgdorferi", virtual = TRUE)
#  tmp2 <- query("tmp2", "sp=Borrelia burgdorferi", virtual = TRUE)
#  tmp3 <- query("tmp3", "sp=Borrelia burgdorferi", virtual = TRUE)
#  (result <- alllistranks())
#  stopifnot(result$count == 3)   # Three ACNUC lists
#  stopifnot(result$ranks == 2:4) # Starting at rank 2
#  #
#  # Summay of current lists defined on the ACNUC server:
#  #
#  sapply(result$ranks, getliststate)
#  closebank()
#  ## End(Not run)