seqinr (version 3.3-3)

isenum: Get the ACNUC number of a sequence from its name or accession number

Description

Gives the ACNUC number of a sequence in the number element of the returned list. More informations are returned for subsequences corresponding to coding sequences.

Usage

isenum(what, idby = c("name", "access"), socket = autosocket())
isn(what, ...)
getNumber.socket(socket, name)
getAttributsocket(socket, name)

Arguments

what

a sequence name or a sequence accession number

idby

is the sequence identified by name or by accession number? Default to name

socket

an object of class sockconn connecting to a remote ACNUC database (default is a socket to the last opened database).

...

arguments passed to isenum.

name

a sequence name.

Value

A list whith the following 6 components:isn(what, ...) is a shortcut for isenum(what, ...)$number.As from seqinR 1.1-3 getNumber.socket and getAttributsocket are deprecated (a warning is issued).

References

http://doua.prabi.fr/databases/acnuc.html

citation("seqinr")

See Also

choosebank, query

Examples

## Not run:  
#   ### Need internet connection
#   choosebank("emblTP")
#   isenum("LMFLCHR36")
#   isn("LMFLCHR36")
#   stopifnot(isn("LMFLCHR36") == 13682678)
#   # Example with CDS:
#   isenum("AB004237")
#   ## End(Not run)