This is an example of raw data for a human STR genetic profile at 16 loci (viz. D8S1179, D21S11, D7S820, CSF1PO, D3S1358, TH01, D13S317, D16S539, D2S1338, D19S433, vWA, TPOX, D18S51, Amelogenin, D5S818, FGA) which are commonly used in forensic sciences for individual identifications.
data(JLO)A list with 3 components.
a list corresponding to the header in the ABIF file
a data.frame corresponding to the Directory in the ABIF file
a list with all raw data in the ABIF file.
This dataset is the expected result when reading the file
2_FAC321_0000205983_B02_004.fsa with the
function read.abif. This dataset is used for
the quality check of this function.
citation("seqinr")
Anonymous (2006) Applied Biosystem Genetic Analysis Data File Format. Available at http://www.appliedbiosystems.com/support/software_community/ABIF_File_Format.pdf. Last visited on 03-NOV-2008.
function read.abif to import files in ABIF format,
data gs500liz for internal size standards,
data ECH for the corresponding allelic ladder,
data identifiler for allele names in the allelic ladder.
# NOT RUN {
data(JLO)
# }
Run the code above in your browser using DataCamp Workspace