Forensic Genetic Profile Raw Data
Forensic Genetic Profile Allelic Ladder Raw Data
To Get Some Protein Statistics
utility data for seqinr
Sequence coming from a remote ACNUC data base
Class for DNA sequence in Fasta Format
AA sequence in Fasta Format
Vectors of coefficients to compute linear forms.
Expected numeric results for Ka and Ks computation
Calculates the fractional G+C content of nucleic acid sequences.
Converts amino-acid one-letter code into the three-letter one
Constructor for class alignment
Expansion of IUPAC nucleotide symbols
Aerobic cost of amino-acids in Escherichia coli and G+C classes
open and close a remote access to an ACNUC database
List of 544 physicochemical and biological properties for the 20 amino-acids
as.matrix.alignment
Returns a socket to the last opened database
To get the count of existing lists and all their ranks on server
Computing an IUPAC nucleotide symbol
Estimation of baseline value
To Convert a forensic microsatellite allele name into its length in base pairs
Codon Adaptation Index
Class for sub-sequences
Converts amino-acid three-letter code into the one-letter one
conversion of a vector of chars into a string
Consensus and profiles for sequence alignments
To Compute the Theoretical Isoelectric Point
To use a standard color with an alpha transparency chanel
Codon Adaptation Index (CAI) w tables
Graphical representation for rearranged nucleotide skews in
prokaryotic chromosomes.
Graphical representation of a recstat analysis.
999 coding sequences from E. coli
Draws a circle
The number of free lists available and annotation lines in an ACNUC server
Composition of dimer/trimer/etc oligomers
Extraction of breakpoint positions on the
rearranged nucleotide skews.
To select a database structured under ACNUC and located on the web
Base composition in ssDNA for 7 bacterial DNA
Number of subsequences in an ACNUC list
complements a nucleic acid sequence
Conversion of a GenBank format file into a glimmer-like
one. Eukaryotic version.
Conversion of a GenBank format file into a glimmer-like one
Pairwise Distances from Aligned Protein or DNA/RNA Sequences
To get available subsequence types in an opened ACNUC database
To close a remote ACNUC database
Generic function to get keywords associated to sequences
Get the exponential growth of nucleic acid database content
Example of results obtained after a call to read.alignment
Generic function to get the length of sequences
Bacterial complete genome data from ncbi ftp site
To extract the sequences information of a sequence or a list of sequence in different formats
Asks for information about an ACNUC list of specified rank
Dot Plot Comparison of two sequences
Example of results obtained after a call to read.alignment
To create on server an ACNUC list from data lines sent by client
To get the rank of a list from its name
Distribution of bacterial genome size from GOLD
GC content and temperature in bacteria
GC content and aerobiosis in bacteria
Extraction of Peak locations, Heights and Surfaces from ABIF data
Utility function to parse answers from an ACNUC server
Text representation of a sequence from an ACNUC server
Cleveland plot for codon usage tables
Print method for objects from class SeqAcnucWeb
Graphical representation for nucleotide skews in
prokaryotic chromosomes.
Fast Allele in Common Count
Import GenMapper Bins configuration file
Mean zscore on 242 complete bacterial chromosomes
Generic function to extract sequence fragments
Conversion of GenBank file into fasta file
Generic Function to get sequence annotations
Generic function to get sequence data
Generic function to get the location of subsequences on the parent sequence
Import GenMapper Panels configuration file
Total number of residues in an ACNUC list
Three aligned nucleic acid sequences
Rename an R object
Extract sequence identified by name or by number from an ACNUC server
Expected numeric results for Ka and Ks in extreme cases
Read ABIF formatted files
Simple plot of an allelic ladder from ABIF data
Electrophoregram plot for ABIF data
Generic function to translate coding sequences into proteins
Modification of an ACNUC list
Translate nucleic acid sequences into proteins
To get a list of sequence names from an ACNUC data base located on the web
Sets the name of an ACNUC list identified by its rank
Light absorption by the water column
split a sequence into sub-sequences
Identifiler allele names
Scans databases for a given sequence accession number
Ka and Ks, also known as dn and ds, computation
Fragment of the E. coli chromosome
Prediction of origin and terminus of replication in bacteria.
Get the ACNUC number of a sequence from its name or accession number
Trim leading and/or trailing spaces in strings
Example of results obtained after a call to read.alignment
GS500LIZ size standards
Example of results obtained after a call to read.alignment
Get help from an ACNUC server
Representation of Amplicon Size Ranges of a STR kit.
To Plot Subsequences on the Parent Sequence
Sequence permutation according to several different models
pK values for the side chain of charged amino acids from various sources
Low level function to get the record count of the specified ACNUC
index file
simple numerical encoding of a DNA sequence.
Low level function to read ACNUC SMJYT index files
function to convert the numeric encoding of a DNA sequence
into a vector of characters
conversion of a string into a vector of chars
Random synonymous coding sequence generation
to plot genetic code as in textbooks
Example of results obtained after a call to read.alignment
Generic function to get the names of sequences
Save sequence names or accession numbers into a file
Biological Sequences Retrieval and Analysis
Protein Molecular Weight
Select annotation lines in an ACNUC database
Read aligned sequence files in mase, clustal, phylip, fasta or msf format
Tests if regions located between Stop codons contain putative CDSs.
To see what's inside the package seqinr
Description of databases known by an ACNUC server
Tests if regions located between Stop codons contain putative CDSs.
A toy example of amino-acid counts in three proteins
A toy example of codon counts in three coding sequences
read FASTA formatted files
Print method for objects from class qaw
Zscore on three strains of Prochlorococcus marinus
Detection of replication-associated effects on base composition asymmetry in
prokaryotic chromosomes.
Prediction of Coding DNA Sequences.
Utility function to escape LaTeX special characters present in a string
Stutter ratio estimation
Codon usage indices
Reverse alignment - from protein sequence alignment to nucleic sequence alignment
Weight of each synonymous codon
To get all words from an alphabet.
Exchange two R objects
Positions of possibly degenerated motifs within sequences
Synonymous codons
Ergheaf gur EBG-13 pvcurevat bs n fgevat
Statistical over- and under- representation of dinucleotides in a
sequence
Write sequence(s) into a file in fasta format