seqmagick (version 0.1.1)

bs_aln: bs_aln

Description

sequence alignment

Usage

bs_aln(x, method = "muscle", ...)

Arguments

x

XStringSet object

method

alignment method

...

additional parameter

Value

aligned sequences, XStringSet object

Examples

# NOT RUN {
fa_file <- system.file("extdata/HA.fas", package="seqmagick")
x <- fa_read(fa_file)
## align first 5 sequences, use `bs_aln(x)` to align all sequences
bs_aln(x[1:5])
# }