seqmagick (version 0.1.1)

fa_filter: fa_filter

Description

fasta filter by searching pattern

Usage

fa_filter(
  fasfile,
  pattern,
  by = "description",
  ignore.case = FALSE,
  outfile = NULL,
  type = "interleaved"
)

Arguments

fasfile

input fasta file

pattern

keyword for filter

by

one of 'description' and 'sequence'

ignore.case

logical

outfile

output file

type

one of 'interleaved' and 'sequential'

Value

BStringSet object