fa_summary

summarize sequences in a fasta file

Tools for reading and writing biological sequences in multiple
formats, including 'FASTA', 'PHYLIP', 'CLUSTAL', 'STOCKHOLM', 'MEGA' and
'GenBank'. Supports interleaved and sequential layouts where applicable,
and reads or writes gzip, bzip2 and xz compressed files transparently.
Converts between formats, renames sequences via a two-column mapping,
summarizes sequence counts, lengths, GC content and ambiguous characters,
and manipulates sequence sets (e.g., filtering by patterns and computing
consensus sequences from alignments). Also includes functions to download
nucleotide records from NCBI by accession.

Guangchuang Yu

seqmagick

Sequence Manipulation Utilities

fa_summary function

<dl><dt>x</dt>
<dd>fasta file or XStringSet object</dd></dl>

Arguments

Author

fa_summary — fa_summary

<dl>

<dt>x</dt>
<dd>fasta file or XStringSet object</dd>

</dl>

fa_summary: fa_summary

Description

Usage

Value

Arguments

Author

Details

Examples