getCovPair

<p>a covariance matrix with positions as dimnames</p>

covData

rangeList1

rangeList2

<p>Extract pair of positions by ranges</p>

Integrate sequencing data (Variant call format, e.g. VCF or BCF) or meta-analysis results in R. This package can help you (1) read VCF/BCF/BGEN files by chromosomal ranges (e.g. 1:100-200); (2) read RareMETAL summary statistics files; (3) read tables from a tabix-indexed files; (4) annotate VCF/BCF files; (5) create customized workflow based on Makefile.

Xiaowei Zhan

seqminer

Efficiently Read Sequence Data (VCF Format, BCF Format, METAL
Format and BGEN Format) into R

Dajiang Liu

Attractive Chaos 

Broad Institute / Massachusetts Institute of Technology 

Genome Research Ltd (GRL) 

Facebook, Inc 

getCovPair function

Extract pair of positions by ranges — getCovPair

Extract pair of positions by ranges

getCovPair: Extract pair of positions by ranges

Description

Usage

Arguments

Value