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seqminer (version 7.1)

rvmeta.readSkewByRange: Read skew by range from METAL-format files.

Description

Read skew by range from METAL-format files.

Usage

rvmeta.readSkewByRange(skewFile, tabixRange)

Arguments

skewFile

character, a skew file (rvtests outputs using --meta skew)

tabixRange

character, a text indicating which range in the VCF file to extract. e.g. 1:100-200

Value

an 3-dimensional array of skewness within given range

See Also

http://zhanxw.com/seqminer/ for online manual and examples

Examples

Run this code
# NOT RUN {
skewFileName = system.file("rvtests/rvtest.MetaSkew.assoc.gz", package = "seqminer")
cfh <- rvmeta.readSkewByRange(skewFileName, "1:196621007-196716634")
# }

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