Read tabix file, similar to running tabix in command line.
tabix.read.table(tabixFile, tabixRange, col.names = TRUE, stringsAsFactors = FALSE)
character, an tabix indexed file
character, a text indicating which range in the VCF file to extract. e.g. 1:100-200
logical, use tabix file header as result headers (default: TRUE)
logical, store loaded data as factors (default: FALSE)
data frame, each elements is an individual line
http://zhanxw.com/seqminer/ for online manual and examples
# NOT RUN { fileName = system.file("vcf/all.anno.filtered.extract.vcf.gz", package = "seqminer") snp <- tabix.read.table(fileName, "1:196623337-196632470") # }
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