seqminer

seqminer-package

SeqMiner provides functions to easily load Variant Call Format (VCF) or METAL format into R

SEQMINER

Integrate sequencing data (Variant call format, e.g. VCF or BCF) or meta-analysis results in R. This package can help you (1) read VCF/BCF/BGEN files by chromosomal ranges (e.g. 1:100-200); (2) read RareMETAL summary statistics files; (3) read tables from a tabix-indexed files; (4) annotate VCF/BCF files; (5) create customized workflow based on Makefile.

Xiaowei Zhan

Efficiently Read Sequence Data (VCF Format, BCF Format, METAL
Format and BGEN Format) into R

Dajiang Liu

Attractive Chaos 

Broad Institute / Massachusetts Institute of Technology 

Genome Research Ltd (GRL) 

Facebook, Inc 

D. Richard Hipp 

SEQMINER function

Maintainer: Xiaowei Zhan <a href="/link/zhanxw%40gmail.com?package=seqminer&version=9.4" data-mini-rdoc="seqminer::zhanxw@gmail.com">zhanxw@gmail.com</a>
Authors:<ul>
<li>Dajiang Liu <a href="/link/dajiang.liu%40gmail.com?package=seqminer&version=9.4" data-mini-rdoc="seqminer::dajiang.liu@gmail.com">dajiang.liu@gmail.com</a></li>
</ul>Other contributors:<ul>
<li>Attractive Chaos <a href="/link/attractor%40live.co.uk?package=seqminer&version=9.4" data-mini-rdoc="seqminer::attractor@live.co.uk">attractor@live.co.uk</a> (We have used the following software and made minimal necessary changes: Tabix, Heng Li &lt;lh3@live.co.uk&gt; (MIT license). We removed standard IO related functions, e.g. printf, fprintf ; also changed its un-safe pointer arithmetics.) [copyright holder]</li>
<li>Broad Institute / Massachusetts Institute of Technology [copyright holder]</li>
<li>Genome Research Ltd (GRL) [copyright holder]</li>
<li>Facebook, Inc [copyright holder]</li>
<li>D. Richard Hipp [copyright holder]</li>
</ul>

Author

Efficiently Read Sequencing Data (VCF format, METAL format) into R — SEQMINER

Maintainer: Xiaowei Zhan <a href='mailto:zhanxw@gmail.com'>zhanxw@gmail.com</a>
Authors:<ul>
<li>Dajiang Liu <a href='mailto:dajiang.liu@gmail.com'>dajiang.liu@gmail.com</a></li>
</ul>

Other contributors:<ul>
<li>Attractive Chaos <a href='mailto:attractor@live.co.uk'>attractor@live.co.uk</a> (We have used the following software and made minimal necessary changes: Tabix, Heng Li &lt;lh3@live.co.uk&gt; (MIT license). We removed standard IO related functions, e.g. printf, fprintf ; also changed its un-safe pointer arithmetics.) [copyright holder]</li>
<li>Broad Institute / Massachusetts Institute of Technology [copyright holder]</li>
<li>Genome Research Ltd (GRL) [copyright holder]</li>
<li>Facebook, Inc [copyright holder]</li>
<li>D. Richard Hipp [copyright holder]</li>
</ul>

SEQMINER: Efficiently Read Sequencing Data (VCF format, METAL format) into R

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