rvmeta.readCovByRange

Read covariance by range from METAL-format files.

Integrate sequencing data (Variant call format, e.g. VCF or BCF) or meta-analysis results in R. This package can help you (1) read VCF/BCF/BGEN files by chromosomal ranges (e.g. 1:100-200); (2) read RareMETAL summary statistics files; (3) read tables from a tabix-indexed files; (4) annotate VCF/BCF files; (5) create customized workflow based on Makefile.

Xiaowei Zhan

seqminer

Efficiently Read Sequence Data (VCF Format, BCF Format, METAL
Format and BGEN Format) into R

Dajiang Liu

Attractive Chaos 

Broad Institute / Massachusetts Institute of Technology 

Genome Research Ltd (GRL) 

Facebook, Inc 

D. Richard Hipp 

rvmeta.readCovByRange function

<dl><dt>covFile</dt>
<dd>character, a covariance file (rvtests outputs using --meta cov)</dd>
<dt>tabixRange</dt>
<dd>character, a text indicating which range in the VCF file to extract. e.g. 1:100-200</dd></dl>

Arguments

Read covariance by range from METAL-format files. — rvmeta.readCovByRange

<dl>

<dt>covFile</dt>
<dd>character, a covariance file (rvtests outputs using --meta cov)</dd>


<dt>tabixRange</dt>
<dd>character, a text indicating which range in the VCF file to extract. e.g. 1:100-200</dd>

</dl>

rvmeta.readCovByRange: Read covariance by range from METAL-format files.

Description

Usage

Value

Arguments

See Also

Examples