hasIndex

internal

Integrate sequencing data (Variant call format, e.g. VCF or BCF) or meta-analysis results in R. This package can help you (1) read VCF/BCF/BGEN files by chromosomal ranges (e.g. 1:100-200); (2) read RareMETAL summary statistics files; (3) read tables from a tabix-indexed files; (4) annotate VCF/BCF files; (5) create customized workflow based on Makefile.

Xiaowei Zhan

seqminer

Efficiently Read Sequence Data (VCF Format, BCF Format, METAL
Format and BGEN Format) into R

Dajiang Liu

Attractive Chaos 

Broad Institute / Massachusetts Institute of Technology 

Genome Research Ltd (GRL) 

Facebook, Inc 

D. Richard Hipp 

hasIndex function

<dl><dt>fileName</dt>
<dd>character vector, representing file names an input file name</dd></dl>

Arguments

Check input file has tabix index — hasIndex

<dl>

<dt>fileName</dt>
<dd>character vector, representing file names an input file name</dd>

</dl>

Check input file has tabix index

hasIndex: Check input file has tabix index

Description

Usage

Value

Arguments