isInRange

Test whether a vector of positions are inside given ranges

Integrate sequencing data (Variant call format, e.g. VCF or BCF) or meta-analysis results in R. This package can help you (1) read VCF/BCF/BGEN files by chromosomal ranges (e.g. 1:100-200); (2) read RareMETAL summary statistics files; (3) read tables from a tabix-indexed files; (4) annotate VCF/BCF files; (5) create customized workflow based on Makefile.

Xiaowei Zhan

seqminer

Efficiently Read Sequence Data (VCF Format, BCF Format, METAL
Format and BGEN Format) into R

Dajiang Liu

Attractive Chaos 

Broad Institute / Massachusetts Institute of Technology 

Genome Research Ltd (GRL) 

Facebook, Inc 

D. Richard Hipp 

isInRange function

<dl><dt>positions</dt>
<dd>characters, positions. e.g. c("1:2-3", "1:4")</dd>
<dt>rangeList</dt>
<dd>character, ranges, e.g. "1:1-3,1:2-4", 1-based index</dd></dl>

Arguments

Test whether a vector of positions are inside given ranges — isInRange

<dl>

<dt>positions</dt>
<dd>characters, positions. e.g. c("1:2-3", "1:4")</dd>


<dt>rangeList</dt>
<dd>character, ranges, e.g. "1:1-3,1:2-4", 1-based index</dd>

</dl>

isInRange: Test whether a vector of positions are inside given ranges

Description

Usage

Value

Arguments

Examples