newJob

Integrate sequencing data (Variant call format, e.g. VCF or BCF) or meta-analysis results in R. This package can help you (1) read VCF/BCF/BGEN files by chromosomal ranges (e.g. 1:100-200); (2) read RareMETAL summary statistics files; (3) read tables from a tabix-indexed files; (4) annotate VCF/BCF files; (5) create customized workflow based on Makefile.

Xiaowei Zhan

seqminer

Efficiently Read Sequence Data (VCF Format, BCF Format, METAL
Format and BGEN Format) into R

Dajiang Liu

Attractive Chaos 

Broad Institute / Massachusetts Institute of Technology 

Genome Research Ltd (GRL) 

Facebook, Inc 

D. Richard Hipp 

newJob function

<dl><dt>id</dt>
<dd>character, job ids.</dd>
<dt>cmd</dt>
<dd>character, commands to run</dd>
<dt>outFile</dt>
<dd>character, the output file names after command are run successfully</dd>
<dt>depend</dt>
<dd>character vector, specify the prerequisite files (e.g. outFile from other jobs)</dd></dl>

Arguments

Create a new job — newJob

<dl>

<dt>id</dt>
<dd>character, job ids.</dd>


<dt>cmd</dt>
<dd>character, commands to run</dd>


<dt>outFile</dt>
<dd>character, the output file names after command are run successfully</dd>


<dt>depend</dt>
<dd>character vector, specify the prerequisite files (e.g. outFile from other jobs)</dd>

</dl>

Create a new job

newJob: Create a new job

Description

Usage

Arguments

Examples