sequenza (version 1.0.5)

get.ci: Compute the confidence interval of cellularity and ploidy

Description

Compute the confidence intervals for a cellularity-ploidy likelihood matrix.

Usage

get.ci(cp.table, interval = 0.95)

Arguments

cp.table

list obtained with baf.model.fit or mufreq.model.fit.

interval

size of confidence interval (in decimal). Defaults to 0.95

Value

• values.x
  matrix of ploidy values with respective likelihood.
• confint.x
  boundaries of the confidence interval of the estimated ploidy.
• max.x
  point estimate of the ploidy value that has the maximum likelihood.
• values.y
  matrix of cellularity values with respective likelihood.
• confint.y
  boundaries of the confidence interval of the estimated cellularity.
• max.y
  point estimate of the cellularity value that has the maximum likelihood.

See Also

baf.model.fit, mufreq.model.fit.