sequenza (version 2.1.0)

get.ci: Compute the confidence interval of cellularity and ploidy

Description

Compute the confidence intervals for a cellularity-ploidy posterior probability matrix.

Usage

get.ci(cp.table, level = 0.95)

Arguments

cp.table

list obtained with baf.model.fit or mufreq.model.fit.

level

Confidence level.

Value

• A list with 6 items:
• values.ploidy
  matrix of ploidy values with respective posterior probability.
• confint.ploidy
  boundaries of the confidence interval of the estimated ploidy.
• max.ploidy
  point estimate of the ploidy value that has the maximum posterior probability.
• values.cellularity
  matrix of cellularity values with respective posterior probability.
• confint.cellularity
  boundaries of the confidence interval of the estimated cellularity.
• max.cellularity
  point estimate of the cellularity value that has the maximum posterior probability.

See Also

cp.plot.

Examples

data(CP.example)
  CP.example.ci <- get.ci(CP.example)
  str(CP.example.ci)