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sequoia (version 1.3.3)

CheckGeno: check GenoM

Description

Check that the provided genotype matrix is in the correct format

Usage

CheckGeno(GenoM, quiet = FALSE)

Arguments

GenoM

the genotype matrix

quiet

suppress messages

Value

a list with low call rate individuals (<0.5, 'ExcludedInd') and low call rate SNPs (<0.1, 'ExcludedSnps'), if any, which will be excluded from pedigree reconstruction.