sequoia (version 2.0.7)

SeqOUT_griffin: Example sequoia output (griffins)

Description

Example output of a sequoia run including sibship clustering, based on the griffin pedigree.

Usage

data(SeqOUT_griffin)

Format

a list, see sequoia

See Also

Ped_griffin, sequoia

Examples

# NOT RUN {
GenoS <- SimGeno(Ped.griffin, nSnp=400, ParMis=0.4)
griffin.sex <- sapply(Ped.griffin$ID,
                    function(x) substr(x, start=nchar(x), stop=nchar(x)))
LH_griffin <- data.frame(ID = Ped_griffin$ID,
                         Sex = ifelse(griffin.sex=="F", 1, 2),
                         BirthYear = Ped_griffin$BY)
SeqOUT_griffin <- sequoia(GenoS, LH_griffin,
                  MaxSibIter = 10,
                  args.AP = list(Smooth = FALSE)) 
# }